Function reference • SCdeconR

All functions
`bulk_generator()`	Generate artificial bulk RNA-seq samples based on simulation
`celltype_expression()`	Compute cell type specific gene expression
`comparedeg_scatter()`	Generate a scatter plot comparing two differential expression results
`comparegsea_scatter()`	Generate a scatter plot comparing two gene set enrichment analysis results
`compute_metrics()`	Statistical evaluations of predicted cell proportions
`construct_ref()`	Integration of single-cell/nuclei RNA-seq data as reference
`gsea_heatmap()`	Heatmap to demonstrate enrichment of selected gene-sets
`gsea_rwplot()`	GSEA random-walk plot
`gsea_sumplot()`	Summary plot of gene set enrichment analysis
`load_scdata()`	Load, filter and normalize scRNA-seq/snRNA-seq data
`prepare_rnk()`	Prepare .rnk file for GSEA preranked analysis
`prop_barplot()`	Bar plot of cell type proportions across samples
`refdata`	Integrated scRNA-seq reference for breast tissue (subset)
`reformat_gmt()` `read_gmt()` `write_gmt()`	Methods to manipulate .gmt files
`run_de()`	Differential expression analysis
`scaling()`	Normalization of gene expression data
`scdecon()`	Deconvolution of bulk RNA-seq data
`transformation()`	Transformation of gene expression data

Reference