Integrated scRNA-seq reference for breast tissue (subset)

Integrated scRNA-seq reference using random subset of two scRNA-seq datasets for breast tissue. One sample is from Komen tissue bank. The other sample is from Gtex snRNA-seq data.

refdata

Format

a Seurat-class object with several metadata included:

cellid

cell barcodes

celltypes

annotated cell types

subjectid

subject id

cohort

data cohort, either "komentissuebank" or "gtex"

Source

https://gtexportal.org/home/singleCellOverviewPage https://pubmed.ncbi.nlm.nih.gov/33763657/